Islam after independence

When Idi Amin, a Ugandan Muslim, became president in 1971, his presidency seemed to be a victory for Uganda's Muslim community. Then in 1972, Amin's expulsion of Asians from Uganda reduced the Muslim population significantly. As his administration deteriorated into a brutal and unsuccessful regime, Uganda's Muslims began to distance themselves from those in power.

After Amin's overthrow in 1979, Muslims became the victims of the backlash that was directed primarily against the Kakwa and Nubian ethnic groups who had supported Amin. Yusuf Lule, who served a brief term as president from 1979 to 1980, was also a Muslim (and a Muganda). He was not a skillful politician, but he was successful in reducing the public stigma attached to Islam.

In 1989 President Yoweri Museveni appealed to Uganda's Muslim community to contribute to national reconstruction, and he warned other Ugandans not to discriminate against Muslims. But at the same time, Museveni admonished Ugandans to avoid "sectarian" allegiances, and this warning was directed at the Islamic community as well as other ethnic and religious groups.

The Islamic University in Uganda is one of Uganda's premier institutes of Islamic teaching. It is located in Mbale in the foothills of Mount Elgon.

Recent Statistics

As it is with many African nations, religious population statistics vary widely depending on the source. For example, more than a million Muslims were estimated to have lived in Uganda in 1998 according to Islamic Web and 9.42 in 2005 according to Islamic Population. The 2004 national census recorded that Muslims represented 12.1% of the population.

Source : http://en.wikipedia.org/wiki/Islam_in_Uganda